General
Preferred name
PF-CBP1
Synonyms
PF-CBP1 HCL ()
PF-CBP1 hydrochloride ()
P&D ID
PD016966
CAS
2070014-93-4
1962928-21-7
Tags
available
probe
Probe info
Probe type
experimental probe
Probe targets
Structure
Probe scores
P&D probe-likeness score
[[ v.score ]]%
Structure formats
[[ format ]]
[[ compound[format === 'MOL' ? 'molblock' : format.toLowerCase()] ]]
Description
(extracted from source data)
DESCRIPTION PF-CBP1 hydrochloride is a highly selective inhibitor of the CREB binding protein bromodomain (CBP BRD). PF-CBP1 inhibits CREBBP and EP300 bromodomains with IC50 of 125 nM and 363 nM respectively. PF-CBP1 hydrochloride reduces LPS-induced inflammatory cytokines expression (IL-1¦Â, IL-6 and IFN-¦Â) in primary macrophages. PF-CBP1 hydrochloride also downregulates RGS4 expression cortical neurons and can be used for the research of neurological disorders, including epilepsy and parkinson's disease, et al[1].
PRICE 61
COMMENT The biochemical, cellular and ITC data reported in the reference (Chem Biol 2015, 22, 1588-1596) support the use of PF-CBP1 as a selective probe for the interrogation of the function of CBP bromodomain in cells. In a slightly later publication (10.1021/acs.jmedchem.6b01022), however, the selectivity versus BRD4 using a different biochemical assay format is reported as being in the 10-fold range rather than 100-fold.  Mar 28 2017 - 9:51pm; I believe this is the best CRBP probe available, but it is far from ideal. It is only weakly potent. Ideally it would be <100 nM but it is only active in cells at or above 1 uM. The margin to BRD4 potency (18 uM) is ~100-fold based on FP but is worse in the Bromoscan panel, so care must be taken not to use it at a concentration that causes BRD4 inhibition. Given that BRD4 inhibitors show a drop off in potency of ~10-fold in cells, I would suggest at concentration of 1-10 uM so this compound will not inhibit BRD4. The compound is also potent against EP300 due to close homology with CRBP and other BRDs are inhibited with <100-fold selectivity. Apr 7 2017 - 1:45pm; PF-CBP1 mildly downregulated expression of key inflammatory genes (e.g., IL6, IL1B, IFNB, TNF) in J774, a murine macrophage cell line, at concentrations typically >/=1 uM and did not show cytotoxicity. Additionally, the compound downregulated RGS4 (a CBP-downstream target gene linked to Parkinson’s disease) in neurons. No in vivo model organism data is available as of yet. Jul 27 2017 - 11:39am
PRICE 64
MOA Antagonist (Chemical Probes.org)
DESCRIPTION PF-CBP1 hydrochloride (PF-CBP1 HCl) is a highly selective inhibitor of the bromodomain of CREB-binding protein(CREBBP).It inhibits CREBBP and p300 bromodomains with IC50 of 125 and 363 nM respectively. (TargetMol Bioactive Compound Library)
DESCRIPTION PF-CBP1 is a highly selective inhibitor of the bromodomain of CREB-binding protein(CREBBP). It inhibits CREBBP and p300 bromodomains. (Enamine Bioactive Compounds)
DESCRIPTION PF-CBP1 HCl is a highly selective inhibitor of the bromodomain of CREB-binding protein(CREBBP). It inhibits CREBBP (IC50: 125 nM) and p300 bromodomains (IC50: 363 nM). (TargetMol Bioactive Compound Library)
Compound Sets
11
Cayman Chemical Bioactives
Chemical Probes.org
CZ-OPENSCREEN Bioactive Library
Enamine Bioactive Compounds
EU-OPENSCREEN Bioactive Compound Library
EUbOPEN Chemogenomics Library
High-quality chemical probes
Mcule NIBR MoA Box Subset
Novartis Chemogenetic Library (NIBR MoA Box)
Selleckchem Bioactive Compound Library
TargetMol Bioactive Compound Library
External IDs
18
Properties
(calculated by RDKit )
Molecular Weight
488.28
Hydrogen Bond Acceptors
7
Hydrogen Bond Donors
0
Rotatable Bonds
10
Ring Count
5
Aromatic Ring Count
4
cLogP
5.21
TPSA
65.55
Fraction CSP3
0.45
Chiral centers
0.0
Largest ring
6.0
QED
0.31
Structural alerts
0
No structural alerts detected
Custom attributes
(extracted from source data)
Target
CREBBP
Epigenetic Reader Domain
Histone Acetyltransferase
p300/CBP
CREB
CREBBP, EP300
EP300, CREBBP
MOA
Epigenetic Reader Domain Inhibitor
N-Ac Lysine competitive CREBBP/EP300 inhibitor
Member status
virtual
Target subclass
Bromodomain
Bromodomain, Bromodomain
Target class
Epigenetics
Epigenetic, Epigenetic
Orthogonal probe
SGC-CBP30
Pathway
Chromatin/Epigenetic
Control
ISOX-INACT (isolipophilic inactive isomer)
Recommended Cell Concentration
1 uM
Source data