General
Preferred name
LP99
Synonyms
LP-99 ()
LP 99 ()
GTPL8572 ()
AK475255 ()
LP99 ()
P&D ID
PD000004
CAS
1808951-93-0
Tags
available
probe
drug candidate
Drug indication
Discovery agent
Probe info
Probe type
calculated probe
experimental probe
Probe selectivity
protein-selective
Probe sources
Bromodomains chemical toolbox
Chemical Probes.org
High-quality chemical probes
SGC Probes
Tool Compound Set
Probe targets
[[ compound.targets[t].gene_name ]]
Probe control
Orthogonal probes
7
No orthogonal probes found
Similar probes
0
No structurally similar probes found
Structure formats
[[ format ]]
[[ compound[format === 'MOL' ? 'molblock' : format.toLowerCase()] ]]
Description
(extracted from source data)
COMMENT
LP99 is the first published selective inhibitor of BRD9 and BRD7 (ITC Kd BRD9 = 99 nM vs. ITC Kd BRD7 = 909 nM). It is selective against a panel of 48 bromodomains, with only BRD9 and BRD7 showing significant binding when assayed by DSF with 10 μM compound. However, 1 uM LP99 only minimally influenced BRD9-dependent gene expression in AML cell lines, as reported by the Vakoc and co-workers (Nat. Chem. Biol. 2016). Since the development of LP99, other BRD9-selective inhibitors have been reported, such as I-BRD9 and BI-9564, that are more relevant as probes to further investigate BRD9 inhibition in cells and in vivo. LP99, nonetheless, could be used for comparison with the more-recently developed BRD9 and BRD7 inhibitors in cellular assays. Aug 22 2016 - 12:16pm; LP99 is a selective inhibitor of BRD9 (KD = 99 nM) and BRD7 (KD = 909 nM) with good selectivity against a panel of 48 bromodomains at 10 uM and with cellular activity in the low uM range. The availability of an inactive enantiomeric control compound is beneficial. Although other BRD9 inhibitors, which may be more relevant for the investigation of BRD9 inhibition in model systems, have since been discovered, LP99 is a useful additional chemotype which can be used for confirming on-target effects. Sep 12 2016 - 7:04pm; The chemical probe LP99 was the first in its class, and this was an important achievement. The Structural Genomics Consortium (SGC) has setup a list of criteria for chemical probes. Two of these are in vitro potency <100 nM and significant cell activity at 1 micromolar. This chemical probe meets these criteria but is at the lower limits of in vitro and cellular potency. Since LP99 was introduced (in December 2014), there have been two additional BRD9/7 chemical probes, BI-9564 and TP-472, and a selective BRD9 chemical probe, I-BRD9. These all have different chemotypes and while they are all commercially available, only TP-472 has a control compound (TP-472N) that is also commercially available. (The inactive enantiomer of LP99 is not commercially available.) Both I-BRD9 and BI-9564 have (published) in vitro off-target activity on CECR2. Given the range of chemotypes and potencies available, it is recommended to use TP-472 in initial screens then follow-up hits with TP-472N (inactive control for TP-472) and LP99. Apr 6 2017 - 12:09pm
DESCRIPTION
LP99, an epigenetic probe, is a potent and selective inhibitor of the BRD7 and BRD9 bromodomains with a Kd of 99 nM against BRD9. LP99 disrupts the binding of BRD7 and BRD9 to chromatin in cells[1].
PRICE
151
DESCRIPTION
LP99 is a selective inhibitor of the bromodomain-containing proteins BRD7 and BRD9 , proteins which participate in chromatin remodelling as part of the SWI/SNF complex. LP99 is a novel and useful chemical probe for investigating BRD7/9 function. This is a compound from the Structural Genomics Consortium's (SGC) Epigenetics Probes Collection.
(GtoPdb)
MOA
Antagonist
(Chemical Probes.org)
DESCRIPTION
LP99 is an epigenetic probe. LP99 disrupts the binding of BRD7 and BRD9 to chromatin in cells. LP99 is an effective and selective inhibitor of the BRD7 and BRD9 bromodomains (Kd: 99 nM against BRD9).
(TargetMol Bioactive Compound Library)
DESCRIPTION
Negative Control for LP 99
(Tocris Bioactive Compound Library)
[[ p.pathway_name ]]
[[ compound.targets[tid].gene_name ]]
Cell lines
2
Organisms
0
Compound Sets
14
Bromodomains chemical toolbox
Cayman Chemical Bioactives
Chemical Probes.org
CZ-OPENSCREEN Bioactive Library
DrugMAP
Guide to Pharmacology
High-quality chemical probes
IPPI - DB
MedChem Express Bioactive Compound Library
Novartis Chemogenetic Library (NIBR MoA Box)
SGC Probes
TargetMol Bioactive Compound Library
Tocris Bioactive Compound Library
Tool Compound Set
[[ a.name ]]
[[ ligand_id ]]
free of charge
External IDs
13
Molecular Weight
515.16
Hydrogen Bond Acceptors
5
Hydrogen Bond Donors
1
Rotatable Bonds
6
Ring Count
4
Aromatic Ring Count
3
cLogP
4.31
TPSA
88.48
Fraction CSP3
0.38
Chiral centers
2.0
Largest ring
6.0
QED
0.53
Structural alerts
0
No structural alerts detected
Custom attributes
(extracted from source data)
Target
Bromodomain-containing protein 7
Bromodomain-containing protein 9
BRD9
Epigenetic Reader Domain
BRD7, BRD9
BRD7
BRD9, BRD7
Primary Target
Bromodomains
MOA
Inhibitor
BRD7/9 inhbitor
BRD9 inhibitor
BRD7/9 Bromodomain Inhibitor
Member status
member
Target subclass
Bromodomain
Bromodomain, Bromodomain
Target class
Epigenetics
Epigenetic, Epigenetic
Orthogonal probe
VZ185
Pathway
Chromatin/Epigenetic
Control
2S,3R-enantiomer
Source data

